| Protein ZmTRAF1 | |
|---|---|
|
ZmTRAF1 is a protein in the TRAF family.
|
|
| Information | |
| Coreg Name: | ZmTRAF1 |
| Species: | Maize |
| Coreg Family: | TRAF |
| Gene Name(Synonym): | MAB1 |
| Uniprot ID: | B0ZC06 |
Protein ZmTRAF1
ZmTRAF1 is a protein in the TRAF family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF00651 | |
| Zm00001eb328550_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d022253 | DAPseq |  |
sequence | fimo | position |
| Zm00001d022253 | DAPseq |  |
sequence | fimo | position |
| Zm00001d022253 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d022253 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmTRAF1 is the regulator
Interactions where ZmTRAF1 is the target
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Zm00001eb328550_T001 from maize genome v5
Amino Acid Sequence
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MAGLLPQHPATVDMSDSVLISSCFTHKFKINYVETEKVAVEHSVRSEQILAGGHLWRIICFPRRIGGMKESNVEYLSIYL
CHESESKDVKAVFEAFVMYKEGTPSLAHKKKLVHVFSPKAGGRHIHGWPCFVERSVLQSFYVTNSGSFVIVGAVKVLQED
PLDVPPSNLGIHLGGLLLGSTDGSDVSFVVGGERFAAHRAVLAARSPVFKAQFFGSMAEATMSSITLHGITAATFKAMLR
FVYTDACPEEAPSEAFQDLLAAADRFQLDRLKILCASKLWNNVSVDTVSATLICAEIYNCPQLKRKCIGFFGEGKGFKTK
AVLTDGFAQLSQQFPSILDELRKKVGA
MAGLLPQHPATVDMSDSVLISSCFTHKFKINYVETEKVAVEHSVRSEQILAGGHLWRIICFPRRIGGMKESNVEYLSIYL
CHESESKDVKAVFEAFVMYKEGTPSLAHKKKLVHVFSPKAGGRHIHGWPCFVERSVLQSFYVTNSGSFVIVGAVKVLQED
PLDVPPSNLGIHLGGLLLGSTDGSDVSFVVGGERFAAHRAVLAARSPVFKAQFFGSMAEATMSSITLHGITAATFKAMLR
FVYTDACPEEAPSEAFQDLLAAADRFQLDRLKILCASKLWNNVSVDTVSATLICAEIYNCPQLKRKCIGFFGEGKGFKTK
AVLTDGFAQLSQQFPSILDELRKKVGA
MAGLLPQHPATVDMSDSVLISSCFTHKFKINYVETEKVAVEHSVRSEQILAGGHLWRIICFPRRIGGMKESNVEYLSIYL
CHESESKDVKAVFEAFVMYKEGTPSLAHKKKLVHVFSPKAGGRHIHGWPCFVERSVLQSFYVTNSGSFVIVGAVKVLQED
PLDVPPSNLGIHLGGLLLGSTDGSDVSFVVGGERFAAHRAVLAARSPVFKAQFFGSMAEATMSSITLHGITAATFKAMLR
FVYTDACPEEAPSEAFQDLLAAADRFQLDRLKILCASKLWNNVSVDTVSATLICAEIYNCPQLKRKCIGFFGEGKGFKTK
AVLTDGFAQLSQQFPSILDELRKKVGA
MAGLLPQHPATVDMSDSVLISSCFTHKFKINYVETEKVAVEHSVRSEQILAGGHLWRIICFPRRIGGMKESNVEYLSIYL
CHESESKDVKAVFEAFVMYKEGTPSLAHKKKLVHVFSPKAGGRHIHGWPCFVERSVLQSFYVTNSGSFVIVGAVKVLQED
PLDVPPSNLGIHLGGLLLGSTDGSDVSFVVGGERFAAHRAVLAARSPVFKAQFFGSMAEATMSSITLHGITAATFKAMLR
FVYTDACPEEAPSEAFQDLLAAADRFQLDRLKILCASKLWNNVSVDTVSATLICAEIYNCPQLKRKCIGFFGEGKGFKTK
AVLTDGFAQLSQQFPSILDELRKKVGA
MAGLLPQHPATVDMSDSVLISSCFTHKFKINYVETEKVAVEHSVRSEQILAGGHLWRIICFPRRIGGMKESNVEYLSIYL
CHESESKDVKAVFEAFVMYKEGTPSLAHKKKLVHVFSPKAGGRHIHGWPCFVERSVLQSFYVTNSGSFVIVGAVKVLQED
PLDVPPSNLGIHLGGLLLGSTDGSDVSFVVGGERFAAHRAVLAARSPVFKAQFFGSMAEATMSSITLHGITAATFKAMLR
FVYTDACPEEAPSEAFQDLLAAADRFQLDRLKILCASKLWNNVSVDTVSATLICAEIYNCPQLKRKCIGFFGEGKGFKTK
AVLTDGFAQLSQQFPSILDELRKKVGA
MAGLLPQHPATVDMSDSVLISSCFTHKFKINYVETEKVAVEHSVRSEQILAGGHLWRIICFPRRIGGMKESNVEYLSIYL
CHESESKDVKAVFEAFVMYKEGTPSLAHKKKLVHVFSPKAGGRHIHGWPCFVERSVLQSFYVTNSGSFVIVGAVKVLQED
PLDVPPSNLGIHLGGLLLGSTDGSDVSFVVGGERFAAHRAVLAARSPVFKAQFFGSMAEATMSSITLHGITAATFKAMLR
FVYTDACPEEAPSEAFQDLLAAADRFQLDRLKILCASKLWNNVSVDTVSATLICAEIYNCPQLKRKCIGFFGEGKGFKTK
AVLTDGFAQLSQQFPSILDELRKKVGA
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00651 |
|
| PF00651 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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TGTTGTATCTATGGCCGGCCTCCTG...
TGTTGTATCTATGGCCGGCCTCCTGCCCCAGCATCCAGCTACTGTAGACATGAGTGACAGCGTGCTCATCAGTTCCTGTTTCACACATAAATTCAAGATCAACTATGTGGAGACGGAGAAGGTCGCCGTCGAGCACTCAGTCAGGTCGGAGCAAATCCTCGCCGGTGGGCACCTCTGGAGGATCATCTGCTTCCCGCGTAGGATCGGAGGTATGAAAGAGAGCAACGTTGAGTACCTATCTATATACCTCTGTCATGAGAGCGAATCCAAAGACGTCAAAGCTGTCTTCGAGGCCTTTGTAATGTACAAAGAAGGCACTCCATCTTTGGCCCATAAGAAAAAGCTGGTGCACGTTTTCTCACCCAAGGCCGGCGGCAGGCACATCCATGGTTGGCCTTGCTTCGTGGAGCGAAGCGTCCTACAGTCGTTCTACGTGACGAATTCTGGCTCGTTCGTCATCGTGGGAGCCGTCAAAGTTTTGCAGGAGGACCCTCTCGACGTGCCGCCCTCCAACCTCGGGATCCATCTCGGCGGCCTCCTGCTGGGCTCCACGGACGGTTCCGACGTTTCGTTCGTTGTCGGCGGCGAGAGGTTCGCTGCTCACCGGGCCGTGCTTGCCGCCCGCTCGCCGGTCTTCAAGGCGCAGTTCTTCGGCTCCATGGCGGAAGCCACCATGTCGTCCATCACCTTGCATGGCATCACGGCAGCGACGTTCAAGGCCATGCTCCGCTTCGTGTACACCGATGCGTGTCCTGAAGAAGCCCCCAGCGAGGCGTTTCAGGACCTGCTCGCTGCTGCTGACCGGTTCCAGTTGGATCGCTTGAAGATCCTGTGCGCGAGCAAGCTGTGGAATAATGTCTCGGTGGATACAGTTTCTGCTACGTTGATCTGTGCCGAAATATATAACTGCCCACAGCTGAAAAGGAAGTGCATTGGGTTCTTCGGGGAGGGGAAGGGCTTCAAGACGAAGGCTGTGTTAACGGATGGTTTTGCTCAGCTGTCGCAGCAGTTCCCGTCCATTCTTGATGAGCTGAGGAAGAAGGTTGGAGCATAGTAGAGATCAGCGGCATGCTAGCCAATAATGGCTGTATTACTAGAGCTTTACGGTATTTTTGACGAGTTCGGC
AC195147.3_FGT001 from maize genome v3
Amino Acid Sequence
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MAGLLPQHPATVDMSDSVLISSCFTHKFKINYVETEKVAVEHSVRSEQILAGGHLWRIICFPRRIGGMKESNVEYLSIYL
CHESESKDVKAVFEAFVMYKEGTPSLAHKKKLVHVFSPKAGGRHIHGWPCFVERSVLQSFYVTNSGSFVIVGAVKVLQED
PLDVPPSNLGIHLGGLLLGSTDGSDVSFVVGGERFAAHRAVLAARSPVFKAQFFGSMAEATMSSITLHGITAATFKAMLR
FVYTDACPEEAPSEAFQDLLAAADRFQLDRLKILCASKLWNNVSVDTVSATLICAEIYNCPQLKRKCIGFFGEGKGFKTK
AVLTDGFAQLSQQFPSILDELRKKVGA
Nucleotide Sequence
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ATGGCCGGCCTCCTGCCCCAGCATC...
ATGGCCGGCCTCCTGCCCCAGCATCCAGCTACTGTAGACATGAGTGACAGCGTGCTCATCAGTTCCTGTTTCACACATAAATTCAAGATCAACTATGTGGAGACGGAGAAGGTCGCCGTCGAGCACTCAGTCAGGTCGGAGCAAATCCTCGCCGGTGGGCACCTCTGGAGGATCATCTGCTTCCCGCGTAGGATCGGAGGTATGAAAGAGAGCAACGTTGAGTACCTATCTATATACCTCTGTCATGAGAGCGAATCCAAAGACGTCAAAGCTGTCTTCGAGGCCTTTGTAATGTACAAAGAAGGCACTCCATCTTTGGCCCATAAGAAAAAGCTGGTGCACGTTTTCTCACCCAAGGCCGGCGGCAGGCACATCCATGGTTGGCCTTGCTTCGTGGAGCGAAGCGTCCTACAGTCGTTCTACGTGACGAATTCTGGCTCGTTCGTCATCGTGGGAGCCGTCAAAGTTTTGCAGGAGGACCCTCTCGACGTGCCGCCCTCCAACCTCGGGATCCATCTCGGCGGCCTCCTGCTGGGCTCCACGGACGGTTCCGACGTTTCGTTCGTTGTCGGCGGCGAGAGGTTCGCTGCTCACCGGGCCGTGCTTGCCGCCCGCTCGCCGGTCTTCAAGGCGCAGTTCTTCGGCTCCATGGCGGAAGCCACCATGTCGTCCATCACCTTGCATGGCATCACGGCAGCGACGTTCAAGGCCATGCTCCGCTTCGTGTACACCGATGCGTGTCCTGAAGAAGCCCCCAGCGAGGCGTTTCAGGACCTGCTCGCTGCTGCTGACCGGTTCCAGTTGGATCGCTTGAAGATCCTGTGCGCGAGCAAGCTGTGGAATAATGTCTCGGTGGATACAGTTTCTGCTACGTTGATCTGTGCCGAAATATATAACTGCCCACAGCTGAAAAGGAAGTGCATTGGGTTCTTCGGGGAGGGGAAGGGCTTCAAGACGAAGGCTGTGTTAACGGATGGTTTTGCTCAGCTGTCGCAGCAGTTCCCGTCCATTCTTGATGAGCTGAGGAAGAAGGTTGGAGCATAG
Zm00001d022253_T001 from maize genome v4
Amino Acid Sequence
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MSDSVLISSCFTHKFKINYVETEKVAVEHSVRSEQILAGGHLWRIICFPRRIGGMKESNVEYLSIYLCHESESKDVKAVF
EAFVMYKEGTPSLAHKKKLVHVFSPKAGGRHIHGWPCFVERSVLQSFYVTNSGSFVIVGAVKVLQEDPLDVPPSNLGIHL
GGLLLGSTDGSDVSFVVGGERFAAHRAVLAARSPVFKAQFFGSMAEATMSSITLHGITAATFKAMLRFVYTDACPEEAPS
EAFQDLLAAADRFQLDRLKILCASKLWNNVSVDTVSATLICAEIYNCPQLKRKCIGFFGEGKGFKTKAVLTDGFAQLSQQ
FPSILDELRKKVGA
Nucleotide Sequence
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ATGAGTGACAGCGTGCTCATCAGTT...
ATGAGTGACAGCGTGCTCATCAGTTCCTGTTTCACACATAAATTCAAGATCAACTATGTGGAGACGGAGAAGGTCGCCGTCGAGCACTCAGTCAGGTCGGAGCAAATCCTCGCCGGTGGGCACCTCTGGAGGATCATCTGCTTCCCGCGTAGGATCGGAGGTATGAAAGAGAGCAACGTTGAGTACCTATCTATATACCTCTGTCATGAGAGCGAATCCAAAGACGTCAAAGCTGTCTTCGAGGCCTTTGTAATGTACAAAGAAGGCACTCCATCTTTGGCCCATAAGAAAAAGCTGGTGCACGTTTTCTCACCCAAGGCCGGCGGCAGGCACATCCATGGTTGGCCTTGCTTCGTGGAGCGAAGCGTCCTACAGTCGTTCTACGTGACGAATTCTGGCTCGTTCGTCATCGTGGGAGCCGTCAAAGTTTTGCAGGAGGACCCTCTCGACGTGCCGCCCTCCAACCTCGGGATCCATCTCGGCGGCCTCCTGCTGGGCTCCACGGACGGTTCCGACGTTTCGTTCGTTGTCGGCGGCGAGAGGTTCGCTGCTCACCGGGCCGTGCTTGCCGCCCGCTCGCCGGTCTTCAAGGCGCAGTTCTTCGGCTCCATGGCGGAAGCCACCATGTCGTCCATCACCTTGCATGGCATCACGGCAGCGACGTTCAAGGCCATGCTCCGCTTCGTGTACACCGATGCGTGTCCTGAAGAAGCCCCCAGCGAGGCGTTTCAGGACCTGCTCGCTGCTGCTGACCGGTTCCAGTTGGATCGCTTGAAGATCCTGTGCGCGAGCAAGCTGTGGAATAATGTCTCGGTGGATACAGTTTCTGCTACGTTGATCTGTGCCGAAATATATAACTGCCCACAGCTGAAAAGGAAGTGCATTGGGTTCTTCGGGGAGGGGAAGGGCTTCAAGACGAAGGCTGTGTTAACGGATGGTTTTGCTCAGCTGTCGCAGCAGTTCCCGTCCATTCTTGATGAGCTGAGGAAGAAGGTTGGAGCATAG
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